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Bioinformatics and Genomics links
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eBIO - Plateforme de Bioinformatique - Université Paris Sud
IBiSA
ReNaBI
EMBNet
EMBOSSReseau national des Plateformes Bioinformatiques
Sites français :
PBIL
PBIL-IBCP
PIG_PBIL
GeneAtlas
Genoscope
AGC
IMGT
Institut Pasteur
Mobyle (Pasteur)
RPBS (Mobyle)
Sites généralistes étrangers :
Bioinformatics.org
Chipster
Sites généraux:
EBI
NCBI
IntegromDB
Similarités :
NPSA
FASTA-Virginia
Similarity Tools EBI
BLAST-NCBI
BLAST-SNP
BLAST-SIB
CBS-DK
Immunology : Immunology ressources
The Immunology Link
ImmGen
EBI : EBI
SRS (EBI)
Array Express
IntAct
GO
AmiGO
webRANK
SANGER : Sanger
Rfam
COSMIC
Census
COSMIC-BIOMART
DECIPHER
EnSembl
NCBI :NCBI
Entrez
PubMed
Blast
Entrez Gene
Human Genome Overview
Sequence Projects
Genomes
Acembly
Genes Omnibus
dbSNP
ReMap hg18-hg19
DCODE
ECRBASE
NCI : NCI
CGAP - NCI
caBIG
GHR - NIH
Lymphochip
The Cancer Genome Atlas
Genome Browse : GoldenPath - UCSC
ENCODE
UCSC-Cancer
Ensembl
H-InvDB
TIGR
FANTOM4
IGB
IGV data
Circos genomic
Genes : Genecards
SOURCE-Stanford
HUGO
Exons : FAST-DB
ACBB - Exonmap
X:MAP
ASTD - EBI
AEDB - EBI
Splice Center (TIGR)
Exhonit_UCSC
GenoSplice
Eurasnet
ASG
ASAP II
AStalavista
H-DBAS
ASPicDB
Transcriptome : GEO
Array-Express
ATLAS
Genesapiens
OncoMine
CIT
MEM
TisGeD
M2DB
GCOD
TCGA
LncRNAdb
TranscriptomeBrowser
Genevestigator
RNA :
RNA World
RNAdb
RNAdb (com)
NRED
UCR LincRNA
miRNA : miRBase
Pictar
TargetScan
MiRanda
GenMir++
MirGen
miRNAMap
miRNAPath
miRNAMiner
EIMMo2
PITA
MMIA
GOmir
Mirmaid
PhenomiR
TargetSpy
GeneMir
MirDB
TAM
miRTar
TarBase
miRTarBase
DIANA-mirExTra
mirAct
miRdSNP
MirTrail
MAGIA
miRNA Targets(Cipf)
Proteome : UniProt
Expasy
ViralZone
Tools
Proteomic
InterPro (EBI)
Pfam (Sanger)
CDD (NCBI)
CorBank - IGM Orsay
SynteView
NextProt
Human Protein Atlas
BReast CAncer genes IARC database
Swiss 2D-PAGE
SRMAtlas
GPMDB
Peptide_Atlas
Petites molecules :
ChEBI
Structures 3D : PDB
PDBSum
RPBS
PAT-CBS
IGS
RapTor
PBE
iPBA
Protein Peeling3D
Polymorphism : HAPMAP
Variants
DGV Beta
dbVAR(NCBI)
Database of Genomic Variants Archive
PennCNV
Segmental_Duplications
GWA studies - NIH
GWA - Wellcome
miRdSNP
SM2PH
LRG
Fast_SNP
ALFRED
Epigenetic :
Genomic Imprinting (Mouse)
IHEC
Human Epigenome Project
Epigenesys
Nature Insight: Epigenetics
Diseases :
OMIM
Orphanet
GARD
Huge_Navigator
IARC
Classification of Diseases
Cancer : Atlas
ICGC
CancerIndex
CGP
Cancer Gene Census
COSMIC
CGAP-NCI
TCGA Portal
dbDEPC
IntoGen
CIG-DB
TICdb
Huge_Navigator
STACK
CancerResource
Leukemia Gene Atlas
PubCan
Mutations :
Mutation Data Base
HGMD
Archives HGMD
Mutation View
MutDB
HGSV
BRCA IARC Db
UMD
MaxEntScan
PolyPhen-2
MutPred
DMDM
SIFT(JCVI)
SIFT(SG)
MAPP
snp3D
PMut
SAAP
SNPeffect
PolyDOMs
I-Mutant.2.0
NNSplice
Align-GVGD
ALAMUT
MutoWeb-Roche
CodonSuite
MutationAssessor
CGH :
CanGEM
CycloNet
TumorScape Catalogue des SCNA
IGV data
TIARA
ECARUCA
DECIPHER
GenoViz - IGB
IGV
ECA
ISCA Consortium
MetaCGH
Progenetix
ArrayMap
Structural variation :
Atlas
Mitelman Database
dbVar
dbVar Archives
DGV
TICdb
ChimerDB_2.0
CGP (Sanger)
Transcription Factor and regulation : JASPAR
EPD
CLEANEX
TRANSFAC-BIOBASE
CORG
TRED-CSHL
TFSEARCH
TESS
DBTSS
EZRETRIEVE
PAZAR
oPOSSUM
GREAT
cisRED
RSA-Tools
STAMP
Transcription Factor Encyclopedia
TF_Mir
RegRNA
CircuitsDB
TFCat
TFCatWiki
Classif. of DBP
TfinDit
Transcription Factor Regulatory Networks
BioProspector
CisFinder
CisGenome
Cistrome
HOMER
MACS
MA2C
MEME
SISSR
ZINBA
Pathways :
KEGG
CGAP Pathways
[Kegg]
[BioCarta]
SPIKE
Pathways Studio
ProteinLounge
Pathway Interaction Database
Metabolic Pathways(Roche)
Pathways (Merck)
LINNEA
PID NCI-Nature
Reactome
WikiPathways
SabioSciences Pathways
GORILLA
ENDEAVOUR
FunCoup
EXALT
BiGG
EnrichNet
Wiki Pathways
Broad/MIT/Harvard :
GSEA
Molecular Signatures Database (MSigDB)
TumorScape
CCLE
Catalogue des SCNA
IGV
eXFrame-HSCI
Primer3
Functionnal Analysis :
DAVID
Babelomics
Ingenuity
GeneCodis
GOAL
TAFFEL
Lymphoid signatures
CTen
Post-translationnal modifications :
Phospho.ELM
PhosphoSitePlus
KinBase
Human Kinome
Phosida
Interactome :
DIP
STRING
IntAct
Hefalmp
InParanoid
Interologous Interaction database
iHOP
PSICQUIC
CePa
Networks :
NetPath
FunCoup
CytoScape
GeneMANIA
BioGRID
BIGG
MIR@NT@N
NCG
BiologicalNetworks
LITVAN
Atlas of Cancer Signalling Networks
Ontologies :
GO
AmiGO
BioPortal
Intelligo
TranscriptomeBrowser
MGED
Drug :
CTD
DrugBank
ClinicalTrials
PharmGKB
ddTargets (/Drug/Disease targets)
cancerRxgene
System Biology :
Institut for System Biology
Sage BioNet
MicroArray genomique:
Agilent
Affymetrix
Nimblegen
Illumina
Séquençage haut débit :
454 Roche
Wiki_SEQanswers
Forum SEQanswers
Solexa - Illumina
Life Technologies
Ion Torrent
Ion Torrent Community
Ion Torrent
SOLID
SOLID software Tools
bioinformatics aspects
NextGeneSeq (Nature)
NBIC BioAssist
Genome Web - Sequences
GSA(Broad)
GEM Libraries
Protocoles NGS
Tutorial Circos
1000 genomes
International Cancer Genome Consortium(ICGC)
Cancer Genome Atlas(TCGA)
CGHub
CGHub (CCLE)
GiGaDB
Exome Variants Server
CGWB
NGS : Data around the world
ChipBase
Introduction aux bases de données en génomique, protéomique ..
Sites et bases de données liées
à la Génétique, la Cytogénétique et l'Oncologie
Biologie :
Kimball's Biology Pages
Wikipedia: Biologie
Génétique : Genetic softwares
Statistiques & R :
R
Bioconductor
Graph Gallery
R for the beginners
Applied Statistics for Bioinformatics Using R
Statistique en Biologie (Lyon1)
Wiki_Statistics
Stattrek
NAR 2007 : Databases
The Molecular Biology Database Collection: 2007 update
Web serveurs
NAR 2008 : Databases
Web serveurs
NAR 2009 : Databases
2009 NAR Database Summary Papers Category List
NAR 2010 : Databases
Web serveurs
NAR 2011 : Databases
Web serveurs
NAR 2012 : Databases
Web serveurs
NAR 2013 : Databases
NAR_Methods
Bibliographie sur les MicroArrays
Microarray Expression Data Analysis References
HGNC genomics links
OpenHelix
INCa
IdF
GSO
NO
LARA
PACA
GO
GE
CRB-France Biobanques
IBiSA
Plateformes IBiSA
IMPBIO
BIM
Equipes bioinfo
Liste Bioinfo
Bioinformations
GDR Stat-Santé
Actualité bioinformatique
Bioinformatics Organization
SFBI
ASSOMBI
Programmes de bourses
SFG
SFBBM
BioMed-Expert
Biotechnologies-France
Bioinfo-fr
Conferences and Workshops:
Congrès,Colloques, Workshops
Mise à jour : Sunday January 13, 18:21, CET 2013