Philippe Dessen'bioinformatic links


Gustave_Roussy    Bioinfo_GR Formation GR    NextCloud_GR    Portail_GR Plateformes Paris-Saclay
French sites General sites Portals
Bibliography Analysis Eukaryotes
Microbiology Virus Cell Lines
Immunology Hematology EBI
Sanger NCBI NCI
Broad Genes Exons
Transcriptome RNA LincRNA
miRNA Proteome Mass spectroscopy
Small Molecules and metabolome 3D Structures Polymorphism
Mutations Cancer Repeats multigenic
CGH and Copy number Structural variations and Gene fusions Transcription Factor and regulation
Methylation Epigenetic Genome Structure
Pathways Functional Analysis Post-translationnal modifications
Interactome Networks Diseases
Clinic and Drug Standards-Nomenclature-Ontologies Cancer classification
Evolution-Phylogeny System Biology MicroArray-Genomic
Analysis NGS NGS Data around the world Genomic Data mining
Biology Genetic Bioinformatics
System & softwares Statistics & R Languages
Nucleic Acid Research Miscellaneous Links Dictionnaries
Canceropoles Organizations Associations
Qwant Google

French sites
Bioinfo_GR    Gustave_Roussy_Github   
Institut Francais de bioinformatique   Plateformes   Outils   Donnees
miroir de INFOBIOGEN   IBiSA ReNaBI   AVIESAN   France-Genomique   Plan France Medecine genomique 2025
PBIL    PBIL-IBCP
Genatlas   Genoscope   MicrosCope   NGS-QC   IMGT
Atlas of Genetics and Cytogenetics in Oncology and Haematology   Atlas_Journal   Atlas_links
Atlas of Genetics and Cytogenetics in Oncology and Haematology (old INIST release)
Institut Pasteur   Galaxy (Pasteur)
RPBS (Mobyle)
Annotator - CIT

General sites
EMBNet   ELIXIR
INSDC   EBI   Ensembl   NCBI   Entrez_gene   Entrez_nuc   Entrez_prot   Entrez_GEO   SRA   GoldenPath_UCSC   GDC_Cancer_Mutations   GDC_Data_Analysis CGAP - NCI   Sanger Center   MSigDB   COSMIC   SRS DKFZ   SRS NL   HGNC   Uniprot   Expasy-SIB   Pharos   Harmonizome   Bioinformatics.org   Chipster   SCIcrunch   Disqover   GENCODE   C   CHESS   DataMed Index   CodeAlignView   vizER   IDDB    The Telomere-to-Telomere (T2T) consortium    UCSC assembly hub browser

Portals
GDC   GDC Data Portal   TARGET    ICGC Data Portal   CancerCoreEurope   TCGA_cBIoPortal   (Datasets)   Broad Tumor Portal   Firebrowse GDAC   (Datasets)   GTEx Portal   Cancer_Imaging   HPA   TissGDB   Integrative Onco Genomics (intOgen)   OASIS Portal   Cancer Browser (UCSC)   UCSC_Xena   UCSC Xena Browser   CancerResource   canSAR   BluePrint Portal   genomicScape   TCGA_Nature   ENCODE_Dashboard_CRG   GENIE_AACR   GENIE_SageNet   Pediatric_RNASeq_cancer   GnomAD browser   Varsome   UCSC_Variant_Integrator   VEP   PeCan (St Jude)   PedPanCanc (DKFZ   StJude_cloud   Foundation_Medicine   R2   Kidsfirstdrc   Cancer Genomics Cloud   MET500   Recount_mRNA   AACR_GENIE cBIoPortal   UALCAN   France_Medecine_genomique2025   St-Jude-cloud   Cohorts   Regulome   Harmonizome   Oncogenomic_landscape   CancerTool   Pedcbioportal   ITCC-P4   OncoSG   Synapse   Cancer_genetic_commons   VICC   ALPHA   Pediatric_genomic_data   HuVarBase

Bibliography
  
PubMed   PubChem  BiblioVie   BiblioINSERM   HAL   IdRef (BNF)   Revues INSERM   PEER   Nota Bene (INCA)   Scopus   Atlas Journal   Cancer Journals   PubMed Central Europe   Google_Scholar   Pan Cancer Papers   ONGene   Theses   arXiv   bioRxiv   medRxiv   Dimensions   IdRef

Similarities and Analysis
NPSA   FASTA-Virginia   Similarity Tools EBI   BLAST-NCBI   BLAST-SNP   BLAST-SIB   CBS-DK   CBS_BioTools   Beijing Institute of Genomics   Venn_diagram   Venny

Eukaryotes
GOLD    EuPathDB    Genolist    Genolevures    URGV-INRA   PGDD    Genomicus    Ensembl    genome Browser (UCSC)

Virus
Virus_Wiki   Viral genomes (NCBI)   Retrovirology   Viralzone   Genome_information_Broker   VirusDetect   PaVE   ICTV   RVDB   Protein_RVDB   VirScan   ERVdb   ERVcaller   ERVmap   HERVd   GVN   Common_virus_lab   Virus_Pathogene_Resource   Virological   REdiscoverTE   Virxicon
Covid-19   Sante_Publique_France   NextStrain   Covid19_JHU   2019nCoVR   NGDC-Publications   GISAID      EMBL_Covid_Portal   NCBI_CoVir   CDC-ncov   UCSC_COVID19   Phylogeny   Spike_mutations   Covariants   SARS-Cov2_UCSC   Browser   WHO_ncov   Wirvirus   IFB_initiatives   UniProt_COVID   Pfam_covid19   Elixir_Covid19      Drugbank_covid19   SARS2020_Consensus   CoronaVIR   Google_Scholar Covid   Covid19dataportal   Covid-Elixir   Covid_IFB   Covid-3D   UCSC_Covid-19   HLA_Covid   HCGD_Han   Global_health   Covid-France   Lineages_outbreak   cancerHERVdb

Microorganisms
GOLD    Microbial Genomics    Microbial Genomes (NCBI)    Microscope    PATRIC   EDGAR-2.0   Hackathon_virtuel   Microbiome   Metasub   ProEP

Cell lines
ATCC    DSMZ CABRI    CCLE    Cell Model passports   Genomics of Drug Sensitivity in Cancer project (Sanger)    Cellosaurus(ExPASy)    Human Protein Atlas    ENCODE Cell lines    HyperCLDB   COSMIC Cell Lines   PDX database   

  CellLines-Tron   Depmap

Immunology
IMGT    Immunology ressources    Lymphochip    The Immunology Link    ImmGen    CD-Chart    DMap-Broad    IEDB   IEDB_Epitope_prediction    MHCI_server    MHCII_server    PAPROC    HLA    NetMHC    IEDB    HLA_Nomenclature    HLA motifs    CIBERSOFT    xCell   Anthony Nolan Research Institute    IPD-IMGT/HLA    Allele_Frequencies    TCIA (The CancerImmunoAtlas)   Allele _frequencies   TISIDB    Easy-HLA    Immunomix    Allele Frequency Net Database   ImmunCluster

Hematology
BluePrint Portal   Harmony   Atlas of Genetics and Cytogenetics in Oncology and Haematology

EBI
EBI   SRS (EBI)   PRIDE   Array Express   IntAct   GO   AmiGO   webRANK   EGA   EGA   Annotare

SANGER
Sanger   Rfam   COSMIC   Census   COSMIC-BIOMART   DECIPHER    EnSembl   VEP   BioMart

NCBI
NCBI   Entrez   PubMed   Blast   Entrez_gene   Entrez_nuc   Entrez_GEO   SRA   Human Genome Overview   Sequence Projects   Genomes   Acembly   Genes Omnibus   dbSNP   ReMap hg18-hg19   DCODE   ECRBASE   SKY_M-FISH

NCI
NCI   OCG   Data_matrix   NCI_resources   CGAP - NCI   CGAP_Download   caBIG   GHR - NIH   Lymphochip   The Cancer Genome Atlas   Cancer_Statistics   CTD2   GDC_Publications

BROAD Institute
Broad Institute   CGA   GSEA   Tumorscape   Tumor Portal   Broad GDAC FireHose   (Datasets_2016)   CCLE   CCLE (Browse Data   Catalogue des SCNA   IGV   eXFrame-HSCI   Primer3   GnomAD browser   Harvard_PGP

Genome Browsers
GoldenPath - UCSC   UCSC (US Mirror)   UCSC (Euro mirror)   CGHub-Browser   ENCODE   ENCODE-RNA_Dashboard   UCSC-Cancer   Ensembl   H-InvDB   TIGR   FANTOM4   IGB   IGV data   Circos genomic   Epigenomic browser   Oncotator   CGWB   CGCA   CHESS   EpiMap

Genes
HGNC   Entrez Gene   GeneCards   SOURCE-Princeton   SOURCE_BatchSearch   HUGO

Exons and splicing
FAST-DB   ACBB - Exonmap   X:MAP   ASTD - EBI   AEDB - EBI   Splice Cenpter (TIGR)   Exhonit_UCSC   GenoSplice   Eurasnet   ASG   ASAP II   AStalavista   H-DBAS   ASPicDB   Genome Reference Consortium

Transcriptome
GEO   Array-Express   ATLAS   Genesapiens   OncoMine   CIT   MEM   TisGeD   M2DB   GCOD   TCGA   LncRNAdb   TranscriptomeBrowser   Genevestigator   SEEK   GTEx   ExpressionBlast   RNA-Seq Nexus   CancerMA   Kozac prediction   BioXpress   TissGDB   Glioblastoma_Atlas   ARCHS4   G4Hunter

RNA
RNA World   rRNA   SILVA   RDP   EZ Taxon   SSU metagenomics   StrainInfo   RNAdb   RNAdb (com)   NRED   DAHSR   RNAx

LincRNA
UCR LincRNA   lincRNA(BROAD)   LncRNAdb   NonCode   Gencode_LncRNA   LNCipedia   Target_Explorer   NONCODE    CAT   TANRIC   LinkRNAKB

miRNA
miRBase   Pictar   TargetScan   MirDB   MiRanda   miRNAMap   mirTarbase    miRTarBase2   miRecords   miRNAPath   miRNAMiner   EIMMo2   PITA   MMIA   GOmir   Mirmaid   PhenomiR   TargetSpy   GeneMir   TAM   miRTar   miRTarBase   DIANA-mirExTra   miRdSNP   MirTrail   MAGIA   miRNA Targets(Cipf)   mirCancer   Oncomir   OncomiRDB   dbDEMC2.0   miTEA   mirDIP   dbMTS

Proteome
UniProt   Expasy   ViralZone   Tools   Proteomic   InterPro (EBI)   Pfam(Sanger)   CDD (NCBI)    CorBank - IGM Orsay   SynteView   NextProt   Human Protein Atlas   CPTAC   BReast CAncer genes IARC database   Swiss 2D-PAGE   SRMAtlas   GPMDB   Peptide_Atlas   OrthoDB   PRODOM   DGD   UET   PRIDE   Protein_Data_Commoon    Complex_Portal   HuVarBase   Mobidb

Mass Spectroscopy
PRIDE   Peptide Atlas   ProteomicDB   MassIVE   Chorus   CPTAC   GPMdb   C-HPP-Project   Unimod   PITD   CPTAC

Small molecules and Metabolomic
ChEBI   PhosphoSite   Human Metabolome Database   UniCarb   SIB Portal   PTM-SD   O-GlycBase   GlycomeDB   Cazy   GlycoProtDB   CanProVar   METLIN   Metabolomic db   BiGG   KEGG_Compound
Proteolyse MEROPS   BRENDA   ENZYME      IUMB_Nomenclature   peptide_cutter

3D structures
PDB   PDBSum Superfamily SCOP CATH   RPBS   PAT-CBS   IGS   RapTor   PBE   iPBA   Protein Peeling3D   ModBase   Swiss_Model   I-TASSER   Predict Protein   ZINC   Modeller   ModWeb   Protein_Model_Portal   AllosMod   Cosmic 3D

Polymorphism
HGV   HGVS_Nomenclature   HGV_Guidelines   ACMG GuideLines   Human Variome Project Recommanded_variome   GME_Variome   LRG   Locus Specific Mutation Databases   HAPMAP   dbSNP   dbVar(NCBI)   b>ClinVar   DGV Variants   DGV download   TOPMED   HLI   Database of Genomic Variants Archive   Singapore HumanMutation   PennCNV   Segmental_Duplications   GWA studies - NIH   GWAS_EBI_Catalog   GWAS Catalog   GWA - Wellcome   SM2PH   Fast_SNP   ALFRED   FrogKB   dbGap   LincSNP   Mutanalyser   Variant_Annotation_Tools   Allele_Frequencies   dbSNFP   ANNOVAR   ANNOVAR_User_Guide   wANNOVAR(online)   Genetic variation databases   VEP (Variants effect Predictor)   UCSC_Variant_Integrator   HGDP   CRAVAT   YHRD   STR   EUROFORGEN   GAVIN   dbMAE   Haplotype_Reference_Consortium   Michigan_server   NSTD37   1000GP   GWASdb_v2   INVITAE   InterVar   wInterVar   1000Genomes_ISGR   Mutation Annotators   Variants_Tools   VCFv4.3   CancerGenomeInterpreter   GeneAtlas_UK   Mastermind   Admixture   TopMed   Bravo   70K_rare_variants   Hirisplex   MisCast   Open_Cravat GenESysV   ALPHA   REVEL   MaveDB   HumsaVar   M-CAP   gnomAD      Varsome

Mutations
COSMIC   CENSUS   Fusions   HGMD   Mutation View   MutDB   HGSV   BRCA IARC Db   UMD    IDbase   PolyPhen-2   GERP   MutPred   DMDM   SIFT(JCVI)   SIFT(SG)   MAPP   snp3D   PMut   SAAP   SNPeffect   PolyDOMs   I-Mutant.2.0   Align-GVGD   ALAMUT   MutoWeb-Roche   CodonSuite   MutationAssessor   MutationTaster   Condel   IntOGen   Align_AGVGD   FannsDB   CONDEL   GeneSplicer   Human_Splicing_Finder   MaxEntScan   NNSplice   Conjoined_Genes   IntOgen   LOVD   MutAnalyser   VariantDB   DoCM   DGIdb   dbNSFP   CADD   Mutation_Aligner   DriverDB   BioMuta   NCG   mSignaturedb   Oncogenic_Mutations      Cytognomics_Splice_mutations CytoConverter

Cancer
Atlas   PDQ Cancer   ICGC   CancerIndex   CGP   Cancer Gene Census   COSMIC   CGAP-NCI   TCGA Portal   Tumor Fusion Gene Data Portal   TCGA Fusion Portal   dbDEPC   IntoGen   CIG-DB   TICdb   Oncofuse   Huge_Navigator   STACK   CancerResource   Leukemia Gene Atlas   PubCan   UCSC-Cancer   Cancer Portal (Broad)   UMLS   OncoSearch   ChiTars2.1   ChiTars3.1   TSGene   MyCancerGenome   Fusion_Cancer   PHIAL   GlobalCancerMap   RASOnD   OASIS   GTEx Portal   PCAWG   PCAWG_Nature PCAWG Resources   canSAR   PMKB   MDAndersson_MPT   CanDL   CancerImagingArchive   HCMDB   KM_plotter   Quiver   PedPanCanc   ProteinPaint   Grobner ped Data   Conjoing   FusionHub   LiGeA   CiGene   Cancer_Genes   DEPO   FusionGDB   OncoKB   CTDatabase   ChimerDB 4.0   DriverDBv3 database   Rare_cancer_genomics   LncRNA Census   VICC Resources   FGViewer   PDXNetwork   CTData
Pediatric cancer
  Pediatric_RNASeq_cancer   PeCan (St Jude)   PedPanCanc (DKFZ   StJude_cloud   Foundation_Medincine   R2   Kidsfirstdrc   Pedriatric_genomic_data

Repeats - multigenic
Dfam   RepeatMasker   huma_genome   Repbase   gEVE   RVDB   Gypsy   RepeatsDB   STRDB   euL1db   EnHERV   HERV_TFBS   HERV   PEVE   ERVMAP   WebHERV   MSDB

CGH and Copy number
TCGA Copy Number Portal   TIARA   ECARUCA   DECIPHER   DECIPHER_Variants   GenoViz - IGB   IGV   ECA   ISCA Consortium   CyDas   MetaCGH   ArrayMap   CGH Data Base (Japan)   CNV association DB   AChro-Puce   SKY_M-FISH   SKY Karyotypes and FISH   Elixir_copy_number_community

Structural variations
ISCN nomenclature   ISCN Wiki   Atlas   Mitelman Database   Entrez_Variation   dbVar   ClinVar   ClinGen   dbVar Archives   DGV   TCGA Copy Number Portal   Cancer Genome Analysis (Broad)   DECIPHER    CytoD   CGP (Sanger)   CENSUS   Fusions   Cytogenetic Resources   GCH Viewer   BreCANdb   ChromothripsisDB   Dfam   FARE_CAFE   AnnotSV

Gene fusions
  Tumor Fusion Gene Data Portal   TCGA Fusion Portal   dbCRID   DACRO   LiGeA   ChiTars2.1   ChiTars5   ChimerDB_2.0   ChimerDB_3.0   ChimerDB4   Fusion_Cancer   Tumor Fusion Gene Data Portal   FusionHub   FusSpot   Fusion_Cancer   Fragile_site_database   FusionHub   FusionGDB

Transcription Factor and regulation
JASPAR   Matrix Vertebrate   TFBSshape   Transcription Factor (Wiki)   TargetGeneReg   EPD   CLEANEX   DBD   TRANSFAC-BIOBASE   CORG   TRED-CSHL   TRED-DALLAS   TFSEARCH   TESS   DBTSS   EZRETRIEVE   PAZAR   oPOSSUM   Cistrom   GREAT   GREAT   cisRED   RSA-Tools   STAMP   Transcription Factor Encyclopedia   TF_Mir   RegRNA   CircuitsDB   TFCat   TFCatWiki   Classif. of DBP   TfinDit   Transcription Factor Regulatory Networks   BioProspector   CisFinder   CisGenome   Cistrome   HOMER   MACS   MA2C   MEME   MEME-ChIP   SISSR   ZINBA   RSAT   ALLGEN   HOMER   Molbiol-tools   WebLogo   TRRUST   hmChIP   GTRD   FastForward   WERAM   KZnfMotifs   RefSeq_Functional_Elements   HOCOMOCO   MoloTool   STAMP   iProEP   MotifScan   MethMotif

Methylation
MethDB   MethHC   CpGIsland microarrays   Human Epigenome project   MethyCancer   MENT   MethylCancer

Epigenetic
Genomic Imprinting (Mouse)   IHEC   Human Epigenome Project   Epigenesys   Nature Insight: Epigenetics   Ensembl Regulatory Track Hub   Epigenomic browser   3DGD   my5C   3D Genome Browser   3DGD   Blueprint   IHEC   Epifactors

Genome Structure
4DGenome   centrosomeDB

Pathways
KEGG   CGAP Pathways   [Kegg]   [BioCarta] CanGEM    CycloNet   SPIKE   Pathways Studio   ProteinLounge   Pathway Interaction Database   Metabolic Pathways(Roche)   Pathways (Merck)   LINNEA   PID NCI-Nature   Reactome   Reactome_Pathways   WikiPathways   SabioSciences Pathways   GORILLA   ENDEAVOUR   FunCoup   EXALT   BiGG   EnrichNet   Wiki Pathways   Graphite Web   ASCN   Pathways Commons   CPDB   PortalgeneGO   CCSB Human Interactome network   Cancer Pathways   SMPDB   geneSCF   WebGIRI  iRefIndex  WikiPathways   PharmaGKB_Pathways

  GSEA   Molecular Signatures Database (MSigDB)   MetaScape   pathDIP4   ConsensusPath   ProteomeHD

Functionnal Analysis
GeneOntology   Amigo2   MSigDB   g:Profiler   GOrilla   Ontologizer   DAVID   Babelomics   Ingenuity   GeneCodis   GOAL   ELM   TAFFEL   Lymphoid signatures   CTen   Transpath   canEvolve   PRIAM   Panther   CHAT   ToppGene   EviNet   Surfaceome   GOnet   ExPathNet   TissuEnrich

Post-translationnal modifications
Phospho.ELM   PhosphoSitePlus   KinBase   Human Kinome   Phosida   MetaNET

Interactome
DIP   STRING   STITCH   IntAct   Hefalmp   InParanoid   Interologous Interaction database   iHOP   PSICQUIC   CePa   STICH   eggNOG   CCSB   Human Interactome   BioProfiling_PPISURV   HumanNet   BioPlex   Huri   3did   BindingDB

Networks
NetPath   FunCoup   CytoScape   GeneMANIA   BioGRID   BIGG   MIR@NT@N   NCG   BiologicalNetworks   LITVAN   Atlas of Cancer Signalling Networks   NEAT   GenSetDB

Diseases
  
OMIM   Orphanet   OrphaSchool   OrphaData>   BNDMR   CRMR   LORD   GARD   Huge_Navigator   IARC   Publications IARC   ICD-O3   International Classification of Diseases for Oncology Medical_classification   ICD10   Pathology   ClinVar   DISEASES   PheGenITutorial   DisGenet   MalaCards   Diseases Database   SNPs3D   UK10 Rare variants   Disease Ontology   BioPortal   BioPortal_Ontologies   SNOMEDCT   SNOMED_CT(Wiki)   ICD9CM   HPO   IRDiRC   DNetDB   Madeline   EDAM(ontology for bioinformatics)   EDAM (EBI)   SIFR BioPortal   eDGAR   MatchMakerExchange   eRAM   digitalslide_TCGA   ONCOTREE   PMKB   EURACAN   ERN-EURACAN   EURACAN(European Rare Adult Cancers)   DEPO   Rare_Cancers_2011   PCT_MDAnderson   Rare_disease_community   RD_Registry   SC2Disease   Rare_diseases   GeneCC :The gene curation coallition   GeCC :Genesearch Gene

Clinic, Drugs and Therapy
  
Medgen   ClinVar   Clinical Trials   OrphaNet   GeneReviews   CTD   DrugBank   ClinicalTrials   PharmGKB   ddTargets (/Drug/Disease targets)   cancerRxgene   BioCentury   DGIdb   CIViC   DoCM   MANTRA   BioProfiling_DRUGSURV   Targeted therapies   OncoTargets   DEPO   PreMedKB   Demap   PPTC   Cancer Database   Harmonizome   Pharos   Carlsbad

Standards - Nomenclature - Ontologies
HGNC   HGV   IUBMB   Biomedical Nomenclature   IUPAC- Nomenclature   GO   Sequence_ontology   AmiGO   QuickGO   BioPortal   Intelligo   TranscriptomeBrowser   MGED   EFO   International Consortium of Human Phenotype Terminologies   HPO   ICHPT   Ontobee   Ontobee - Cell Ontology   Human phenotype Ontology   Disease Ontology   BioPortal   BioPortal_Ontologies   SNOMEDCT   ICD9CM   LOINC   AACR-GENIE   GA4GH   Interpretation_Variants   ANPGM (arbres decisionnels)   BNDMR   CancerGeneNet   Alliance of Genome Resources Portal   AgroPortal   GLAB   G-DOC Hub

Cancer classification
  
ICD-O3   International Classification of Diseases for Oncology   ICD10   ICD10data   Kegg_Cancer   Classification Tumors COSMIC   SEER   SEER_ICD03   NCI_Thesaurus

Evolution - Phylogeny
Phylogeny.fr NGPhylogeny.fr   Phylip   MEGA   HOGENOM   Genomicus   Bgee   Phylogenomics   TolWeb

System Biology
Institut for System Biology   Sage BioNet   SIDER   Linked Life Data   HOVERGEN   HOGENOM

MicroArray- Genomic
  
Agilent   Affymetrix   Nimblegen   Illumina   OMICSearch

NGS
  
454 RocheRNA Seq blog   Wiki_SEQanswers   Forum SEQanswers   Solexa - Illumina   Life Technologies   Ion Torrent   Ion Torrent Community   Ion Torrent   SOLID   SOLID software Tools   bioinformatics aspects   NextGeneSeq (Nature)   NBIC BioAssist   Genome Web - Sequences   GSA(Broad)   GEM Libraries   Protocoles NGS   Tutorial Circos   RNA_Seq_bioinfo_Tools   Array Directory   Geoffrey Routh Site   RNA_Seq Blog Data Analysis   NGS-HOMER_tutorials   EBI_NGS Practival Course   NGS_Course   RNA_Seq types   FAS Tutorial - Harvard   DGE_QC_analysis

NGS: Data around the world
GoldenPath (UCSC)   ENCODE   EnSembl   GeneCode   1000 genomes   [Browser]   IGSR   UCSC-Cancer   International Cancer Genome Consortium(ICGC)    Cancer Genome Atlas(TCGA)   Nature_TCGA   CGHub   CGHub(browser)   CGHub (CCLE)   GiGaDB   EVS_Exome Variant Server   CGWB   CGCI   ChipBase   In Silico DB   TIARA   BioGPS   RVS   MiTranscriptome   Informatics for RNA-seq: A web resource for analysis on the cloud   LocExpress   MatchmakerExchange   geneMatcher   Terabase

Genomic Data mining
  NCBI   COREMINE   iHOP   OncoSearch   OBO   NCIThesaurus   NCIThesaurus   Disease ontology   Genetic Home Reference   Tagxedo   Literome   SPLAT   Resource_Identifier_Portal   MetaMap   DLAD4U

Biology
  
Kimball's Biology Pages   Wikipedia: Biologie

Genetic
Genetic softwares

Bioinformatics
EMBOSS   OMIC Tools   Drive5   NGS Related Software   Open Source bioinformatics tools   Sequences Alignments   Molecular graphic   BioinformaticsWeb   Popular software for bioinformatics   PBIL   Bio_Tools   GA4GH   G6G   Waggawagga   Intro_Bioinformatique_GR

Statistics & R
  
R   Bioconductor   Quick_R   R_Shiny   Graph Gallery   ggplot2  [doc]   R for the beginners   Applied Statistics for Bioinformatics Using R   Aide-Memoire T(A. Duclert)   R in DataScience   BIMS_Rstudio   Statistique en Biologie (Lyon1)   Wiki_Statistics   Stattrek   PCR   Manuals - IIGB   Bioconductor_Manual   R_Workshop   R for Data Science   Biostat_Softwares   Xcas   Stat Medicales

System
Quick Guide UNIX (EMBNet)
Introduction UNIX
UNIX Tutorial for Beginners
Initiation à Unix
SnakeMake

System and Languages
MOOC
Perl      Python3   Tutorial Python Github
Programmation HTML
XUL Javascript   W3schools JS
LaTex

Nucleic Acid Research
NAR 2007 : Databases    The Molecular Biology Database Collection: 2007 update    Web servers
NAR 2008 : Databases    Web servers
NAR 2009 : Databases    2009 NAR Database Summary Papers Category List
NAR 2010 : Databases    Web servers
NAR 2011 : Databases    Web servers
NAR 2012 : Databases    Web servers
NAR 2013 : Databases    Web servers
NAR 2014 : Databases    Web servers
NAR 2015 : Databases    Web servers
NAR 2016 : Databases    Web servers
NAR 2017 : Databases    Web servers
NAR 2018 : Databases    Web servers
NAR 2019 : Databases    Web servers
NAR 2020 : Databases    Web servers
NAR 2021 : Databases    Web servers
NAR 2022 : Databases    Web servers
NAR 2023 : Databases    Web servers

NAR Databases (alpha list)
NAR_Methods

Miscellaneous links
Deanbulum_INFOBIOGEN
Bibliographie sur les MicroArrays
Microarray Expression Data Analysis References
HGNC genomics links
OpenHelix
Bioinformatics Links Directory
BiolMol softwares
The G6G Directory of Omics and Intelligent Software
OMICTools
BioTools (Elixir)
BioSharing
Database Communs (Cn)
KeatsLab
Venn diagram
PDF Tools

Histoire de la Recherche medicale
Cours_College-de-France

Dictionnaries and translation
Linguee   Reverso   Translator   ATILF   Dictionnaire de l Academie   CNRTL   FranceTerme   Le_Dictionnaire   Larousse   Word Reference   DeepL    Zotero

Canceropoles
INCa    IdF   Cancers rares    GSO    NO    LARA    PACA    GO    GE
Projet Biobanques
Groupes de Travail Canceropoles

Organizations - Bourses -Appel a projets
IBiSA    Plateformes IBiSA Bioinformations    Actualité bioinformatique    Bioinformatics Organization    Bioinfo-fr    JeBIF     GDR BIM    IFB
BioMed-Expert   GOBLET_Training Portal   Portail Appel à projets Santé   AAP Paris_Saclay   INCA   GeneéI thique   Plateformes Etalab   ScanSante   Sante_Publique_France   Data_gouv   BioConf_fr

Associations
  
Portail_Societes_savantes   List of Associations
SFBI    SFG   SFBBM   ANPGM   ACLF   ACMG   Fondation Maladies Rares


Contact : Dessen Philippe

Updated Tue Jul 01 11:35:50 CET 2023